Course on UNIX and Genomic Data - Prague, 2019¶
This course aims to introduce the participants to UNIX - an interface that is one of the most convenient options for working with big textual data. Special attention is put on working with Next Generation Sequencing (NGS) data. Most of the NGS data formats are intentionally text based because the authors wanted to use UNIX for the processing. By combining basic UNIX tools one can achieve results that would require programming or finding specialized software for each of the tasks in other environments.
Not knowing ‘the right way’ to do things can be intimidating for beginners, so an additional section exploring ‘best practice’ is available for self learning.
Schedule:
| Friday February 1st (14:00-18:00) | |
| Afternoon I |
|
| Afternoon Break (~ 0.5h) | |
| Afternoon II | Unix - Basic |
| Saturday February 2nd (9:30-18:30) | |
| Morning |
|
| Lunch (~ 1.5h) | |
| Afternoon I | Unix - Advanced II |
| Afternoon Break (~ 0.5h) | |
| Afternoon II | Graphic Session |
| Sunday February 3rd (9:30-18:30) | |
| Morning |
|
| Lunch (~ 1.5h) | |
| Afternoon I | Genomic tools |
| Afternoon Break (~ 0.5h) | |
| Afternoon II | Exercise (Variant quality) |
Initial instructions:
Course outline:
Slack chat room.
Additional reference materials:
Supplemental information: