UNIX and NGS
praha-february-2019
Installation instructions
Connecting to the virtual machine
Unix - Basics
Unix - Advanced I
Unix - Advanced II
Graphics session
Read quality
Genome assembly
Genomic tools session
Variant quality
Links
Advanced Bash
R Studio
Visual design
Genomic tools
Genomic data formats
Best practice
Reference manual for UNIX introduction
Important NGS formats
Additional exercises
Course materials preparation
Slide decks
UNIX and NGS
Docs
»
Links
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Links
¶
Here is few sources that you can go through, when you get bored during the course…
Advanced Bash
¶
Advanced Bash-Scripting Guide
Bash one-liners explained
How redirection really works
What version of bash you need for X to work
R Studio
¶
A few nice cheat sheets
Visual design
¶
Martin Krzywinski: Keynote on Visual Design Principles
Nature Methods’ Points of View
Gestalt principles 1
Gestalt principles 2
Well designed color palettes
Genomic tools
¶
Bedtools
Vcftools
Genomic data formats
¶
VCF
GFF
BED
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