UNIX and NGS
1.0
Installation instructions
Connecting to the remote machine
Session 1: Basic Unix
Session 2: Genomics data
Session 3: Plain text file processing in Unix
Session 4: Running a project
Session 5: Graphics session
Session 6: Git and GitHub
Session 7: Variant quality
Session 8: Bioinformatic pipelines
Links
A few more tips
Reference manual for Unix introduction
Important NGS formats
Additional exercises
Course materials preparation
Slide decks
UNIX and NGS
Index
Index
G
|
W
G
git add {file}
git checkout -- {filename}
git checkout --ours {file path}
git checkout --theirs {file path}
git checkout -b {new-name}
git checkout {branch-name}
git commit
git commit -am '{what i did}'
git diff
git log
git merge --abort
git merge --continue or git commit
git pull
,
[1]
git push
git push -u origin {branch-name}
git stash
git stash pop
git status
W
working copy